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1

Langevin dynamics with dichotomous noise; direct simulation and applications

Barik, Debashis, Ghosh, Pulak Kumar, Ray, Deb Shankar

Journal:

Journal of Statistical Mechanics Theory and Experiment

Year:

2006

Language:

english

File:

PDF, 604 KB

english, 2006

2

Steady state statistical correlations predict bistability in reaction motifs

Chakravarty, Suchana, Barik, Debashis

Journal:

Molecular BioSystems

Year:

2017

Language:

english

File:

PDF, 2.49 MB

english, 2017

3

Noise-induced transition in a quantum system

Pulak Kumar Ghosh, Debashis Barik, Deb Shankar Ray

Journal:

Physics Letters A

Year:

2005

Language:

english

File:

PDF, 190 KB

english, 2005

4

Inhomogeneous quantum diffusion and decay of a meta-stable state

Pulak Kumar Ghosh, Debashis Barik, Deb Shankar Ray

Journal:

Physics Letters A

Year:

2006

Language:

english

File:

PDF, 212 KB

english, 2006

5

Inhomogeneous quantum diffusion and decay of a meta-stable state

Pulak Kumar Ghosh, Debashis Barik, Deb Shankar Ray

Journal:

Physics Letters A

Year:

2007

Language:

english

File:

PDF, 212 KB

english, 2007

6

Quantum State-Dependent Diffusion and Multiplicative Noise: A Microscopic Approach

Debashis Barik, Deb Shankar Ray

Journal:

Journal of Statistical Physics

Year:

2005

Language:

english

File:

PDF, 222 KB

english, 2005

7

Quantum escape kinetics over a fluctuating barrier

Ghosh, Pulak Kumar, Barik, Debashis, Bag, Bidhan Chandra, Ray, Deb Shankar

Journal:

The Journal of Chemical Physics

Year:

2005

Language:

english

File:

PDF, 349 KB

english, 2005

8

Bistability by multiple phosphorylation of regulatory proteins

Orsolya Kapuy, Debashis Barik, Maria Rosa Domingo Sananes, John J. Tyson, Béla Novák

Journal:

Progress in Biophysics and Molecular Biology

Year:

2009

Language:

english

File:

PDF, 1.05 MB

english, 2009

9

Stochastic Simulation of Enzyme-Catalyzed Reactions with Disparate Timescales

Barik, Debashis, Paul, Mark R., Baumann, William T., Cao, Yang, Tyson, John J.

Journal:

Biophysical Journal

Year:

2008

Language:

english

File:

PDF, 260 KB

english, 2008

10

Quantum phase-space function formulation of reactive flux theory

Barik, Debashis, Banik, Suman Kumar, Ray, Deb Shankar

Journal:

The Journal of Chemical Physics

Year:

2003

Language:

english

File:

PDF, 439 KB

english, 2003

11

Numerical simulation of transmission coefficient using c-number Langevin equation

Barik, Debashis, Bag, Bidhan Chandra, Ray, Deb Shankar

Journal:

The Journal of Chemical Physics

Year:

2003

Language:

english

File:

PDF, 351 KB

english, 2003

12

Anharmonic quantum contribution to vibrational dephasing

Barik, Debashis, Ray, Deb Shankar

Journal:

The Journal of Chemical Physics

Year:

2004

Language:

english

File:

PDF, 355 KB

english, 2004

13

Noise-induced quantum transport

Ghosh, Pulak Kumar, Barik, Debashis, Ray, Deb Shankar

Journal:

Physical Review E

Year:

2005

Language:

english

File:

PDF, 105 KB

english, 2005

14

Dynamics of a metastable state nonlinearly coupled to a heat bath driven by external noise

Chaudhuri, Jyotipratim Ray, Barik, Debashis, Banik, Suman Kumar

Journal:

Physical Review E

Year:

2006

Language:

english

File:

PDF, 486 KB

english, 2006

15

Escape rate from a metastable state weakly interacting with a heat bath driven by external noise

Chaudhuri, Jyotipratim Ray, Barik, Debashis, Banik, Suman Kumar

Journal:

Physical Review E

Year:

2006

Language:

english

File:

PDF, 128 KB

english, 2006

16

A UNIFIED DESCRIPTION OF TIME DEPENDENCE OF INFORMATION ENTROPY PRODUCTION AND FLUX IN THERMAL BROADBAND NOISE-DRIVEN DYNAMICAL SYSTEMS

MAJEE, PRADIP, GOSWAMI, GURUPADA, BARIK, DEBASHIS, BAG, BIDHAN CHANDRA

Journal:

International Journal of Modern Physics B

Year:

2009

Language:

english

File:

PDF, 180 KB

english, 2009

17

A model of yeast cell-cycle regulation based on multisite phosphorylation

Barik, Debashis, Baumann, William T, Paul, Mark R, Novak, Bela, Tyson, John J

Journal:

Molecular Systems Biology

Year:

2010

Language:

english

File:

PDF, 2.26 MB

english, 2010

18

Quantum equilibrium factor in the decay of a metastable state at low temperature

Barik, Debashis, Ray, Deb Shankar

Journal:

Journal of Statistical Mechanics Theory and Experiment

Year:

2006

Language:

english

File:

PDF, 537 KB

english, 2006

19

Measurement and modeling of transcriptional noise in the cell cycle regulatory network

Ball, David, Adames, Neil, Reischmann, Nadine, Barik, Debashis, Franck, Christopher, Tyson, John J., Peccoud, Jean

Journal:

Year:

2013

Language:

english

File:

PDF, 4.57 MB

english, 2013

20

Landauer's blowtorch effect as a thermodynamic cross process: Brownian cooling

Das, Moupriya, Das, Debojyoti, Barik, Debashis, Ray, Deb Shankar

Journal:

Physical Review E

Year:

2015

Language:

english

File:

PDF, 435 KB

english, 2015

21

Self-generated microbial population or cultured microflora – an important criterion toward development of an effective and economically viable road map for organic soil management

Bera, Ranjan, Seal, Antara, Datta, Anupam, Saha, Susmita, Dolui, Ajit K., Sarkar, Ranjit K., Chatterjee, Ashis K., Barik, Arun K., De, Gopal C., Mazumdar, Debashis

Journal:

Archives of Agronomy and Soil Science

Year:

2016

Language:

english

File:

PDF, 1.70 MB

english, 2016

22

Metal-Free [3+2]-Cycloaddition of Thiiranes with Isothiocyanates, Isoselenocyanates and Carbodiimides: Synthesis of 2-Imino-Dithiolane/Thiaselenolane/Thiazolidines

Punniyamurthy, Tharmalingam, Satheesh, Vanaparthi, Vivek Kumar, Sundaravel, Vijay, Murugan, Barik, Debashis

Journal:

Asian Journal of Organic Chemistry

Year:

2018

Language:

english

File:

PDF, 1.44 MB

english, 2018

23

A Stochastic Model of the Yeast Cell Cycle Reveals Roles for Feedback Regulation in Limiting Cellular Variability

Barik, Debashis, Ball, David A., Peccoud, Jean, Tyson, John J., You, Lingchong

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 7.90 MB

english, 2016

24

Parallel arrangements of positive feedback loops limit cell-to-cell variability in differentiation

Dey, Anupam, Barik, Debashis, Garcia-Ojalvo, Jordi

Journal:

Year:

2017

Language:

english

File:

PDF, 4.59 MB

english, 2017

25

Mathematical modeling identifies Lck as a potential mediator for PD-1 induced inhibition of early TCR signaling

Arulraj, Theinmozhi, Barik, Debashis, Hetman, Michal

Journal:

Year:

2018

Language:

english

File:

PDF, 2.91 MB

english, 2018

26

Temperature-dependent divergence of thermal conductivity in momentum-conserving one-dimensional lattices with asymmetric potential

G. R., Archana, Barik, Debashis

Journal:

Physical Review E

Year:

2019

File:

PDF, 585 KB

2019

27

Dichotomous nature of bistability generated by negative cooperativity in receptor-ligand binding

Dey, Anupam, Barik, Debashis

Journal:

ACS Synthetic Biology

Year:

2019

Language:

english

File:

PDF, 807 KB

english, 2019

28

Investigation of chemical noise in multisite phosphorylation chain using linear noise approximation

Das, Soutrick, Barik, Debashis

Journal:

Physical Review E

Year:

2019

Language:

english

File:

PDF, 707 KB

english, 2019

29

Qualitative and quantitative nature of mutual interactions dictate chemical noise in a democratic reaction network

Das, Soutrick, Barik, Debashis

Journal:

Physical Review E

Year:

2020

File:

PDF, 2.06 MB

2020

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